Detalles de la búsqueda
1.
RPEMHC: improved prediction of MHC-peptide binding affinity by a deep learning approach based on residue-residue pair encoding.
Bioinformatics;
40(1)2024 01 02.
Artículo
en Inglés
| MEDLINE | ID: mdl-38175759
2.
CAPLA: improved prediction of protein-ligand binding affinity by a deep learning approach based on a cross-attention mechanism.
Bioinformatics;
39(2)2023 02 03.
Artículo
en Inglés
| MEDLINE | ID: mdl-36688724
3.
The role of microstructure of extracellular proteins in dewaterability of alkaline pretreatment sludge during bioleaching.
Environ Res;
244: 117969, 2024 Mar 01.
Artículo
en Inglés
| MEDLINE | ID: mdl-38109956
4.
TransPPMP: predicting pathogenicity of frameshift and non-sense mutations by a Transformer based on protein features.
Bioinformatics;
38(10): 2705-2711, 2022 05 13.
Artículo
en Inglés
| MEDLINE | ID: mdl-35561183
5.
Identifying modifications on DNA-bound histones with joint deep learning of multiple binding sites in DNA sequence.
Bioinformatics;
38(17): 4070-4077, 2022 09 02.
Artículo
en Inglés
| MEDLINE | ID: mdl-35809058
6.
Simultaneous Prediction of Interaction Sites on the Protein and Peptide Sides of Complexes through Multilayer Graph Convolutional Networks.
J Chem Inf Model;
63(7): 2251-2262, 2023 04 10.
Artículo
en Inglés
| MEDLINE | ID: mdl-36989086
7.
DeepMPSF: A Deep Learning Network for Predicting General Protein Phosphorylation Sites Based on Multiple Protein Sequence Features.
J Chem Inf Model;
63(22): 7258-7271, 2023 Nov 27.
Artículo
en Inglés
| MEDLINE | ID: mdl-37931253
8.
Multisource Attention-Mechanism-Based Encoder-Decoder Model for Predicting Drug-Drug Interaction Events.
J Chem Inf Model;
62(23): 6258-6270, 2022 Dec 12.
Artículo
en Inglés
| MEDLINE | ID: mdl-36449561
9.
Cluster-Transition Determining Sites Underlying the Antigenic Evolution of Seasonal Influenza Viruses.
Mol Biol Evol;
36(6): 1172-1186, 2019 06 01.
Artículo
en Inglés
| MEDLINE | ID: mdl-30851115
10.
STRUM: structure-based prediction of protein stability changes upon single-point mutation.
Bioinformatics;
32(19): 2936-46, 2016 10 01.
Artículo
en Inglés
| MEDLINE | ID: mdl-27318206
11.
Improved packing of protein side chains with parallel ant colonies.
BMC Bioinformatics;
15 Suppl 12: S5, 2014.
Artículo
en Inglés
| MEDLINE | ID: mdl-25474164
12.
MultiModRLBP: A Deep Learning Approach for Multi-Modal RNA-Small Molecule Ligand Binding Sites Prediction.
IEEE J Biomed Health Inform;
PP2024 May 13.
Artículo
en Inglés
| MEDLINE | ID: mdl-38739505
13.
How Deepbics Quantifies Intensities of Transcription Factor-DNA Binding and Facilitates Prediction of Single Nucleotide Variant Pathogenicity With a Deep Learning Model Trained On ChIP-Seq Data Sets.
IEEE/ACM Trans Comput Biol Bioinform;
20(2): 1594-1599, 2023.
Artículo
en Inglés
| MEDLINE | ID: mdl-35471887
14.
DGCddG: Deep Graph Convolution for Predicting Protein-Protein Binding Affinity Changes Upon Mutations.
IEEE/ACM Trans Comput Biol Bioinform;
20(3): 2089-2100, 2023.
Artículo
en Inglés
| MEDLINE | ID: mdl-37018301
15.
ctP2ISP: Protein-Protein Interaction Sites Prediction Using Convolution and Transformer With Data Augmentation.
IEEE/ACM Trans Comput Biol Bioinform;
20(1): 297-306, 2023.
Artículo
en Inglés
| MEDLINE | ID: mdl-35213314
16.
TransRNAm: Identifying Twelve Types of RNA Modifications by an Interpretable Multi-Label Deep Learning Model Based on Transformer.
IEEE/ACM Trans Comput Biol Bioinform;
20(6): 3623-3634, 2023.
Artículo
en Inglés
| MEDLINE | ID: mdl-37607147
17.
Enhancement of sludge dewaterability by repeated inoculation of acidified sludge: Extracellular polymeric substances molecular structure and microbial community succession.
Chemosphere;
339: 139714, 2023 Oct.
Artículo
en Inglés
| MEDLINE | ID: mdl-37543234
18.
SemanticCAP: Chromatin Accessibility Prediction Enhanced by Features Learning from a Language Model.
Genes (Basel);
13(4)2022 03 23.
Artículo
en Inglés
| MEDLINE | ID: mdl-35456374
19.
DeepNup: Prediction of Nucleosome Positioning from DNA Sequences Using Deep Neural Network.
Genes (Basel);
13(11)2022 10 30.
Artículo
en Inglés
| MEDLINE | ID: mdl-36360220
20.
Learning Useful Representations of DNA Sequences From ChIP-Seq Datasets for Exploring Transcription Factor Binding Specificities.
IEEE/ACM Trans Comput Biol Bioinform;
19(2): 998-1008, 2022.
Artículo
en Inglés
| MEDLINE | ID: mdl-32976105